Links

__HIV:__

[|What is HIV?] Seth Berkley HIV Talk HIV Wikipedia HIV Databases HIV Protein Information

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 * __Important Articles:__ **
 * 1) [[file:AIDS as a Zoonosis, Scientific and Public Health.pdf]]
 * 2)  [[file:Widespread Adaptive Evolution in the Human Immunodeficiency Virus Type 1.pdf]]
 * 1) [[file:Codon-Substitution Models for Heterogeneous Selection Pressure at Amino Acid Sites.pdf]]
 * 1) [[file:MAXIMUM LIKELIHOOD ANALYSIS OF ADAPTIVE EVOLUTION IN HIV-1 GP120 ENV GENE.pdf]]
 * 2) Comparative Study of Adaptive Molecular Evolution in Different Human Immunodeficiency Virus Groups and Subtypes
 * 3) Basic HIV Genome Structure
 * 4) [|Evidence of Selective Pressure on the env Gene of HIV]
 * 5) [|Lecture on Trees]

**__Sequence Aligning Tools:__** [|Sequence Alignment Powepoint] [|Sequence Alignment in HIV Computational Analysis] ClustalW2 PAL2NAL [|Codon Alignment lanl] Phylogenetic Analysis by Maximum Likelihood (PAML) Multithreaded Electronic PCR me-PCR: a refined ultrafast algorithm for identifying sequence-defined genomic elements, Raj's Paper from CHOP [|PhyML 3.0] EBI T-COFFEE server


 * Background Information: **
 * ( virology, genetics, HIV, retroviruses, statistics, and linux) **

Bioinformatics Toolbox [|Genetics Lecture Links] Video Lectures, watch "21 thru 24" to better understand Virology, Immunology, and AIDS

Evaluation of an Improved Branch-Site Likelihood Method for Detecting Positive Selection at the Molecular Level [|Mapping Sites of Positive Selection]
 * __Research Papers__ **

R Tutorial [|R Statistics Tutorials] [|R Reference Card]
 * __Basics:__**

**Siemens Competition Instructions** ISEF
 * __Competition Links:__**

__**LANL Genome Table:**__